adknaupp / microsophila

Bioinformatics pipeline to generate microbiome assembly data.
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Variable resource requirements #2

Open adknaupp opened 1 year ago

adknaupp commented 1 year ago

call_bowtie2.sh runs optimally on 32 cores and is therefore hard-coded to tell bowtie2 to use 32 cores. However, not everyone has this many. Make this a variable amount.