Add new HMC functionality

admb-project / admb

AD Model Builder

http://admb-project.org

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Add new HMC functionality #72

Closed colemonnahan closed 8 years ago

colemonnahan commented 8 years ago

Part way through adding extended functionality for static HMC, which will be a template for NUTS. It currently has step size adaptation, deals with divergences gracefully, and has new and improved progress report and output that matches Stan.

codecov-io commented 8 years ago

Current coverage is 36.67% (diff: 4.45%)

Merging #72 into master will decrease coverage by 0.22%

@@             master        #72   diff @@
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  Files           724        725     +1   
  Lines         60524      60904   +380   
  Methods        6867       6873     +6   
  Messages          0          0          
  Branches       9535       9600    +65   
==========================================
+ Hits          22337      22338     +1   
- Misses        36764      37141   +377   
- Partials       1423       1425     +2

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