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adnaniazi / tailfindr

An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
https://www.cbu.uib.no/valen/
GNU General Public License v3.0
53 stars 18 forks source link

Fail to install package form GitHub #73

Closed hannalee809 closed 3 months ago

hannalee809 commented 3 months ago

Hi! I am having issues installing the tailfindr in RStudio (version 4.4.0). I've been able to install devtools and rbokeh successfully but when I try to install tailfindr using devtools, I get this error:

Screenshot 2024-08-01 at 10 33 25 AM

Please let me know if you have any ideas to resolve this issue!

adnaniazi commented 3 months ago

Hi,

To solve this error, you need to address the authentication issue. The error message indicates that there's a problem with the credentials being used to access the GitHub repository. Here are the steps to resolve this:

Check your GitHub credentials:

Ensure you have a valid GitHub Personal Access Token (PAT) set up. Verify that the token has the necessary permissions to access the repository.

Configure your Git credentials:

Rungit config --global credential.helper store to enable credential storage. Then set your GitHub username and PAT:

git config --global user.name "Your GitHub Username"
git config --global user.password "Your GitHub PAT"

I would also recommend that you use Dorado instead of tailfindr for polyA tail profiling. I have left academia and will no longer update or develop it further. So for your project's sake, it is better that you use a tool that has a forseeable future.

Best, Adnan

hannalee809 commented 3 months ago

Hi,

Thank you for your quick response. Sorry to see you go, but best of luck with everything!