Scientific references

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The "_snp.txt" files contains information about original scientific publication for SNPs. However it might not be straightforward to find the correct publication. More information about those papers needs to be added in the documentation.

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Francisella references

• Birdsell, D. N. et al. Francisella tularensis subsp. tularensis Group A.I, United States. Emerg. Infect. Dis. 20, 861–865 (2014).
• Chanturia, G. et al. Phylogeography of Francisella tularensis subspecies holarctica from the country of Georgia. BMC Microbiol. 11, 139 (2011).
• Dwibedi, C. et al. Long-range dispersal moved Francisella tularensis into western Europe from the East. Microbial Genomics (2016)
• Gyuranecz, M. et al. Phylogeography of Francisella tularensis subsp. holarctica, Europe. Emerg. Infect. Dis. 18, 290–3 (2012).
• Karadenizli, a et al. Genomic analyses of Francisella tularensis strains confirm disease transmission from drinking water sources, Turkey, 2008, 2009 and 2012. Eurosurveillance 20, 21136 (2015).
• Karlsson, E. et al. The phylogeographic pattern of Francisella tularensis in Sweden indicates a Scandinavian origin of Eurosiberian tularaemia. Environ. Microbiol. 15, 634–645 (2013).
• Myrtennäs, K. et al. Introduction and persistence of tularemia in Bulgaria. Infect. Ecol. Epidemiol. 6, 1–9 (2016).
• Schulze, C. et al. High and novel genetic diversity of Francisella tularensis in Germany and indication of environmental persistence. Epidemiol. Infect. 144, 3025–3036 (2016).
• Svensson, K. et al. A real-time PCR array for hierarchical identification of Francisella isolates. PLoS One 4, e8360 (2009).
• Vogler, A. J. et al. Phylogeography of Francisella tularensis: global expansion of a highly fit clone. J. Bacteriol. 191, 2474–84 (2009).

Still missing information about Busch et al.

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Bacillus

• Van Ert, M. N. et al. Global genetic population structure of Bacillus anthracis. PLoS One 2, e461 (2007).

Brucella

• Foster, J. T. et al. Real-time PCR assays of single-nucleotide polymorphisms defining the major Brucella clades. J. Clin. Microbiol. 46, 296–301 (2008).

Coxiella

• Karlsson, E. et al. Eight New Genomes and Synthetic Controls Increase the Accessibility of Rapid Melt-MAMA SNP Typing of Coxiella burnetii. PLoS One 9, e85417 (2014).

Yersinia

• Morelli, G. et al. Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity. Nat. Genet. 42, 1140–3 (2010).

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Closed by #18