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adw96 / DivNet

diversity estimation under ecological networks
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Why is BW1 so different in the following 2 plots? #9

Closed adw96 closed 5 years ago

adw96 commented 6 years ago

plot(divnet_phylum_name, color = "red") + ylim(0,2) + ylab("Shannon estimate with DivNet")

lee_phylum %>% otu_table %>% apply(2, shannon) %>% data.frame("shannon" = .) %>% rownames_to_column %>% ggplot(aes(x = rowname, y = shannon)) + geom_point() + theme_bw() + ylim(0,2) + ylab("Naive Shannon estimate") + xlab("samples")

adw96 commented 5 years ago

How did you check this before closing it, @bryandmartin?

bryandmartin commented 5 years ago

Sorry, I closed the wrong issue here.

adw96 commented 5 years ago

Thanks -- please just be careful in future. I just confirmed that 6e15eb3 did indeed fix this issue.