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adw96
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DivNet
diversity estimation under ecological networks
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A couple cosmetic/flow edits to beta diversity vignette
#91
ailurophilia
closed
2 years ago
1
Updated description file with new version no (0.4.0)
#90
ailurophilia
closed
2 years ago
1
Sinha et al. data also now saved as a phyloseq object in data. Update…
#89
ailurophilia
closed
2 years ago
1
problems with beta_diversity.Rmd
#88
adw96
closed
2 years ago
12
unit tests
#87
adw96
closed
2 years ago
2
CRAN check is now failing
#86
adw96
closed
3 years ago
0
adding warning for non-standard characters in sample names
#85
svteichman
closed
3 years ago
0
Addressing Issues 53 and 63. Adding in documentation on the various w…
#84
paulinetrinh
closed
3 years ago
1
Testing-Add in R-CMD-check badge update
#83
paulinetrinh
closed
3 years ago
0
change status badge for R-CMD-CHECK
#82
paulinetrinh
closed
3 years ago
0
Comment out testing on ubuntu-20.04 r-devel because bioconductor seem…
#81
paulinetrinh
closed
3 years ago
0
change ordering of dependencies, change ubuntu-devel script
#80
paulinetrinh
closed
3 years ago
0
attempt to fix ubuntu development testing
#79
paulinetrinh
closed
3 years ago
0
install bioconductor package version for ubuntu build
#78
paulinetrinh
closed
3 years ago
0
Fixing .yaml to pass ubuntu checks
#77
paulinetrinh
closed
3 years ago
0
change installation for SpiecEasi in .yaml
#76
paulinetrinh
closed
3 years ago
0
Beta diversity test for binomial covariate
#75
aimirza
closed
3 years ago
3
Diversity for subsets of the total profile
#74
aimirza
closed
3 years ago
3
simplifyBeta does not work with special characters in sample names
#73
aimirza
closed
3 years ago
3
Testing
#72
adw96
closed
3 years ago
1
Include DIVNET-rs alternate implementation on DIVNET homepage
#71
benyoung93
closed
3 years ago
1
divnet fails silently if one of the parallelization packages is not installed.
#68
mmp3
closed
3 years ago
2
testDiversity does not work for beta diversity measures
#67
mmp3
closed
3 years ago
3
INPUT of divnet()
#66
ari9609
closed
3 years ago
1
Install error
#65
EmilyHoedt
closed
3 years ago
4
how can I make the estimation speed up and escape the limit error?
#64
Ivy-ops
closed
3 years ago
3
"X" vs formula confusion
#63
AdrianS85
closed
3 years ago
2
Update beta_diversity_helper.R
#62
AstrobioMike
closed
3 years ago
2
default X is specified differently for phyloseq W and matrix W
#61
pooranis
closed
3 years ago
1
Release of the package
#60
llrs
closed
3 years ago
1
DivNet error bars
#59
mooreryan
closed
3 years ago
1
R warning
#58
adityabandla
closed
3 years ago
8
get rid of appveyor testing remnants
#57
adw96
closed
4 years ago
1
Remotes
#56
samhunter
closed
4 years ago
4
Paired samples using betta_random/testDiversity
#55
kunstner
closed
3 years ago
5
Add and test formula implementation
#54
bryandmartin
closed
4 years ago
3
Understanding the use of "X" in divnet() function
#53
gregpoore
closed
3 years ago
4
Understanding the use of "X" in divnet() function
#52
gregpoore
closed
4 years ago
0
set seed for vignette for reproducibility
#51
adw96
closed
4 years ago
0
Verifying DivNet getting started vignette
#50
laracp
closed
4 years ago
5
Bray-curtis statistical test
#49
adriaaula
closed
4 years ago
5
Problems with lams parameters
#48
adw96
closed
4 years ago
1
Speed up 2
#47
mooreryan
closed
3 years ago
3
Tracking accept values in the EM loop
#46
mooreryan
closed
3 years ago
4
Move MCrow to Rcpp
#45
mooreryan
closed
4 years ago
3
full phyloseq object and otu_table give different results
#44
adw96
closed
4 years ago
0
Converting to Exponential Shannon
#43
ianartmor
closed
4 years ago
3
feature request: Plot Diversity Estimates per Factor
#42
kunstner
closed
4 years ago
2
fix link to tutorial
#41
adw96
closed
4 years ago
0
DivNet::shannon_true with zeroes, duh
#40
adw96
closed
4 years ago
1
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