This is an attempt to get breakaway to pass its R-CMD-check. The changes are the following:
1) in the workflow yaml files, master is removed, since breakaway now defaults to main.
2) in R-CMD-check.yaml, both ubuntu builds have been removed. Both the windows and mac builds are currently passing.
3) a new workflow has been added in the file ubuntu-check.yaml which checks the release version of ubuntu. This is currently failing due to an issue with phyloseq.
4) in the vignette diversity-hypothesis-testing.Rmd, DivNet is no longer used. All chunks that use DivNet or DivNet output do not run when the document is knit. There is a note to the user that says if they are on a mac or linux machine they should be fun to remove eval=FALSE and run these code chunks, and if they are on Windows, they can hopefully run those code chunks from their console.
This is an attempt to get breakaway to pass its R-CMD-check. The changes are the following:
1) in the workflow yaml files, master is removed, since breakaway now defaults to main. 2) in
R-CMD-check.yaml, both ubuntu builds have been removed. Both the windows and mac builds are currently passing. 3) a new workflow has been added in the fileubuntu-check.yamlwhich checks the release version of ubuntu. This is currently failing due to an issue withphyloseq. 4) in the vignettediversity-hypothesis-testing.Rmd, DivNet is no longer used. All chunks that use DivNet or DivNet output do not run when the document is knit. There is a note to the user that says if they are on a mac or linux machine they should be fun to removeeval=FALSEand run these code chunks, and if they are on Windows, they can hopefully run those code chunks from their console.