aechchiki / BgeeDB_wdir

Add new ontologies for non-model species with RNA-seq annotated to be released in Bgee14
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stages to annotate: mammals #2

Open aechchiki opened 8 years ago

aechchiki commented 8 years ago

Erinaceus europaeus. 9365 Info stage: adult SRX211592 SRX211593 SRX211642 SRX211643 SRX211686 SRX211687

About life stages of hedgehog:


Canis lupus familiaris. 9615 Info stage: adult SRX211582 SRX211583 SRX211632 SRX211633 SRX211677 SRX211678

About adulthood in dogs:


Felis catus. 9685 Info stage: adult SRX211594 SRX211595 SRX211596 SRX211644 SRX211645 SRX211646 SRX211688 SRX211689 SRX211690

About life stages of cats:


Equus caballus: 9796 Info stage: adult SRX211589 SRX211590 SRX211591 SRX211639 SRX211640 SRX211641 SRX211684 SRX211685

About life stages of horses:


Oryctolagus cuniculus : 9986 Info stage: adult SRX211611 SRX211612 SRX211659 SRX211660 SRX211704 SRX211705

About life stages in rabbit:


Cavia porcellus: 10141 Info stage: adult SRX211586 SRX211587 SRX211588 SRX211636 SRX211637 SRX211638 SRX211681 SRX211682 SRX211683

About life stages in cavy:

aechchiki commented 8 years ago

mammals ontologies structure: [Term] id: xxxDv:0000000 name: xxx life cycle stage def: "A spatiotemporal region encompassing some part of the life cycle of an organism." [UBERON:0000105] synonym: "developmental stage" EXACT [] synonym: "stage" NARROW [] xref: UBERON:0000105

[Term] id: xxxDv:0000001 name: xxx life cycle def: "Temporal interval that defines xxx life from fertilisation to death." [Bgee:curator "Bgee"] xref: UBERON:0000104 is_a: xxxDv:0000000 ! xxx life cycle stage

[Term] id: xxxDv:0000002 name: prenatal stage def: "xxx life cycle stage that starts with fertilisation and ends with birth." [Bgee:curator "Bgee"] xref: UBERON:0000068 is_a: xxxDv:0000000 ! xxx life cycle stage relationship: part_of xxxDv:0000001 ! xxx life cycle

[Term] id: xxxDv:0000003 name: immature stage def: "xxx life cycle stage that starts at birth and ends at the reach of sexual maturity (TIME1)." [Bgee:curator "Bgee"] xref: UBERON:0000112 is_a: xxxDv:0000000 ! xxx life cycle stage relationship: part_of xxxDv:0000001 ! xxx life cycle relationship: immediately_preceded_by xxxDv:0000002 ! prenatal stage

[Term] id: xxxDv:0000004 name: mature stage def: "xxx life cycle stage that starts at sexual maturity (TIME1) and ends with death." [Bgee:curator "Bgee"] xref: UBERON:0000113 is_a: xxxDv:0000000 ! xxx life cycle stage relationship: part_of xxxDv:0000001 ! xxx life cycle relationship: immediately_preceded_by xxxDv:0000003 ! immature stage

[Term] id: xxxDv:0000005 name: adulthood stage def: "xxx life cycle stage that starts at sexual maturity (TIME1) and ends at senior age (TIME2)." [Bgee:curator "Bgee"] xref: UBERON:0018241 is_a: xxxDv:0000000 ! xxx life cycle stage relationship: part_of xxxDv:0000004 ! mature stage

[Term] id: xxxDv:0000006 name: aged stage def: "xxx life cycle stage that starts at senior age (TIME2) and ends with death." [Bgee:curator "Bgee"] xref: UBERON:0007222 is_a: xxxDv:0000000 ! xxx life cycle stage relationship: part_of xxxDv:0000004 ! mature stage relationship: immediately_preceded_by xxxDv:0000005 ! adulthood stage

aechchiki commented 8 years ago

Example, for dog. screenshot - 07042016 - 06 11 31 pm