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aeeckhou / shallowHRD

This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination Deficiency of a tumor based on the number of Large-scale Genomic Alterations (LGAs).
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shallowHRDv2 #20

Closed ToonRosseel closed 4 months ago

ToonRosseel commented 4 months ago

Dear, any idea when version 2 will be available online?

aeeckhou commented 4 months ago

Hello,

For now the version 2 is not available online.

My former lab intellectual property department is working on finding a means of distribution for clinical use. If you want to test it for research, you can provide fastQ files for analysis and return the results. They have set up a fast and secure data exchange system. If you want to do so, I would advice to send a mail directly to celine.callens@curie.fr or marc-henri.stern@curie.fr .

Best regards, Alexandre