shallowHRD_hg19_1.13_QDNAseq_no_chrX.R zone 21 position inaccuracy

aeeckhou / shallowHRD

This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination Deficiency of a tumor based on the number of Large-scale Genomic Alterations (LGAs).

30 stars 13 forks source link

shallowHRD_hg19_1.13_QDNAseq_no_chrX.R zone 21 position inaccuracy #21

Closed GGanakin closed 3 months ago

GGanakin commented 3 months ago

CTTN Position: hg38 chr11:70,398,404-70,436,584

aeeckhou commented 3 months ago

Hello,

Indeed you are right, I mistakenly took the hg38 position instead of the hg19 position. I will push a correction directly in the main directory by this evening (Paris time).

Have a nice day, Alexandre