These are the packages that would be merged, in order:
Calculating dependencies... done!
[ebuild N *] app-editors/atom-9999
Would you like to merge these packages? [Yes/No] y
Verifying ebuild manifests
!!! A file listed in the Manifest could not be found: /var/lib/layman/aegypius/app-editors/atom/atom-0.94.0.ebuild
Emerging (1 of 1) app-editors/atom-9999 from aegypius
Jobs: 0 of 1 complete, 1 running Load avg: 1.44, 1.14, 0.57
!!! A file listed in the Manifest could not be found: /var/lib/layman/aegypius/app-editors/atom/atom-0.94.0.ebuild
Failed to emerge app-editors/atom-9999
Jobs: 0 of 1 complete, 1 failed Load avg: 1.44, 1.14, 0.57
The following package has failed to build or install:
(app-editors/atom-9999::aegypius, ebuild scheduled for merge)
*
$ sudo emerge --ask atom
These are the packages that would be merged, in order:
Calculating dependencies... done! [ebuild N *] app-editors/atom-9999
Would you like to merge these packages? [Yes/No] y
!!! A file listed in the Manifest could not be found: /var/lib/layman/aegypius/app-editors/atom/atom-0.94.0.ebuild