[DOC] Fix broken links

[TonyBagnall]

Describe the issue linked to the documentation

big changes have resulted in a lot of broken links, this is the output from sphynx generated by @CodeLionX

• [ ] examples/distances/sklearn_distances.ipynb:59: [broken] ../datasets/data_structures.ipynb:

• [ ] examples/datasets/datasets.ipynb:29: [broken] benchmarking_data.ipynb:

• [ ] examples/datasets/data_loading.ipynb:11: [broken] data_structures.ipynb:

• [ ] examples/datasets/datasets.ipynb:17: [broken] data_conversions.ipynb:

• [ ] api_reference/auto_generated/aeon.clustering.TimeSeriesKMedoids.rst:117: [broken]

• [ ] https://doi.org/10.1002/9780470316801.ch2: 403 Client Error: Forbidden for url: https://onlinelibrary.wiley.com/doi/10.1002/9780470316801.ch2

• [ ] examples/similarity_search/distance_profiles.ipynb:88: [broken] https://github.com/aeon-toolkit/aeon/blob/3ed8be70a1ff086af92fcdd2b98bf2ae6d4d8520/aeon/utils/numba/general.py#L522: Anchor 'L522' not found

• [ ] examples/transformations/feature_extraction_with_tsfresh.ipynb:56: [broken]

• [ ] https://github.com/aeon-toolkit/aeon/blob/main/examples/02_classification_univariate.ipynb: 404 Client Error: Not Found for url: https://github.com/aeon-toolkit/aeon/blob/main/examples/02_classification_univariate.ipynb

• [ ] api_reference/data_format.rst:57: [broken] https://github.com/aeon-toolkit/aeon/blob/main/examples/loading_data.ipynb: 404 Client Error: Not Found for url:

• [ ] examples/transformations/rocket.ipynb:80: [broken] https://github.com/aeon-toolkit/aeon/tree/main/examples/classification.ipynb: 404 Client Error: Not Found for url:

• [ ] examples/pydata/Amsterdam-2023/Lets do the time warp again.ipynb:4: [broken]

• [ ] https://github.com/aeon-toolkit/aeon/tree/v0.11.1/examples/pydata/Amsterdam-2023/Letsdothetimewarpagain.ipynb: 404 Client Error: Not Found for url: https://github.com/aeon-toolkit/aeon/tree/v0.11.1/examples/pydata/Amsterdam-2023/Letsdothetimewarpagain.ipynb examples/distances/distances.ipynb:4: [redirected permanently]

• [ ] https://github.com/aeon-toolkit/aeon/tree/v0.11.1/examples/transformations/feature_extraction_with_tsfresh.ipynb to https://github.com/aeon-toolkit/aeon/blob/v0.11.1/examples/transformations/feature_extraction_with_tsfresh.ipynb examples/transformations/resizing.ipynb:4: [broken]

• [ ] https://github.com/aeon-toolkit/aeon/tree/v0.11.1/examples/transformations/resizing.ipynb: 404 Client Error: Not Found for url: https://github.com/aeon-toolkit/aeon/tree/v0.11.1/examples/transformations/resizing.ipynb

• [ ] api_reference/auto_generated/aeon.regression.deep_learning.InceptionTimeRegressor.rst:177: [broken] https://github.com/hfawaz/InceptionTime/blob/master/regressors/inception.py: 404 Client Error: Not Found for url:

• [ ] mentoring.md:307: [broken]

• [ ] https://github.com/sponsors/cholder: 429 Client Error: Too Many Requests for url: https://github.com/cholder

• [ ] https://join.slack.com/t/aeon-toolkit/shared_invite/zt-22vwvut29-HDpCu~7VBUozyfL_8j3dLA to https://aeon-toolkit.slack.com/join/shared_invite/zt-22vwvut29-HDpCu~7VBUozyfL_8j3dLA about.md:159: [broken] https://mlh.io: 403 Client Error: Forbidden for url: https://mlh.io/ examples/anomaly_detection/anomaly_detection.ipynb:2: [redirected permanently]

• [ ] api_reference/auto_generated/aeon.performance_metrics.forecasting.mean_squared_scaled_error.rst:76: [broken] https://mofc.unic.ac.cy/wp-content/uploads/2020/03/M5-Competitors-Guide-Final-10-March-2020.docx: 404 Client Error: Not Found for url: https://www.unic.ac.cy/iff/research/forecasting/wp-content/uploads/2020/03/M5-Competitors-Guide-Final-10-March-2020.docx

• [ ] examples/anomaly_detection/anomaly_detection.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/anomaly_detection/anomaly_detection.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/anomaly_detection/anomaly_detection.ipynb examples/base/base_classes.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/base/base_classes.ipynb: 500 Server Error: Internal Server

• [ ] Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/base/base_classes.ipynb examples/base/series_estimator.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/base/series_estimator.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/base/series_estimator.ipynb examples/benchmarking/bakeoff_results.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/benchmarking/bakeoff_results.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/benchmarking/bakeoff_results.ipynb examples/benchmarking/benchmarking.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/benchmarking/benchmarking.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/benchmarking/benchmarking.ipynb examples/benchmarking/reference_results.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/benchmarking/reference_results.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/benchmarking/reference_results.ipynb examples/benchmarking/regression.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/benchmarking/regression.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/benchmarking/regression.ipynb examples/benchmarking/regression_results_per_dataset.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/benchmarking/regression_results_per_dataset.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/benchmarking/regression_results_per_dataset.ipynb examples/classification/classification.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/classification/classification.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/classification/classification.ipynb examples/classification/convolution_based.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/classification/convolution_based.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/classification/convolution_based.ipynb examples/classification/deep_learning.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/classification/deep_learning.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/classification/deep_learning.ipynb examples/classification/dictionary_based.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/classification/dictionary_based.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/classification/dictionary_based.ipynb examples/classification/distance_based.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/classification/distance_based.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/classification/distance_based.ipynb examples/classification/early_classification.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/classification/early_classification.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/classification/early_classification.ipynb examples/classification/feature_based.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/classification/feature_based.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/classification/feature_based.ipynb examples/classification/hybrid.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/classification/hybrid.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/classification/hybrid.ipynb examples/classification/interval_based.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/classification/interval_based.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/classification/interval_based.ipynb examples/classification/shapelet_based.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/classification/shapelet_based.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/classification/shapelet_based.ipynb examples/clustering/clustering.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/clustering/clustering.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/clustering/clustering.ipynb examples/clustering/partitional_clustering.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/clustering/partitional_clustering.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/clustering/partitional_clustering.ipynb examples/datasets/data_loading.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/datasets/data_loading.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/datasets/data_loading.ipynb examples/datasets/data_unequal.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/datasets/data_unequal.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/datasets/data_unequal.ipynb examples/datasets/datasets.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/datasets/datasets.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/datasets/datasets.ipynb examples/datasets/load_data_from_web.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/datasets/load_data_from_web.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/datasets/load_data_from_web.ipynb examples/datasets/provided_data.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/datasets/provided_data.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/datasets/provided_data.ipynb examples/distances/distances.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/distances/distances.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/distances/distances.ipynb examples/distances/sklearn_distances.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/distances/sklearn_distances.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/distances/sklearn_distances.ipynb examples/networks/deep_learning.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/networks/deep_learning.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/networks/deep_learning.ipynb examples/pydata/Amsterdam-2023/Lets do the time warp again.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/pydata/Amsterdam-2023/Letsdothetimewarpagain.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/pydata/Amsterdam-2023/Letsdothetimewarpagain.ipynb examples/regression/regression.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/regression/regression.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/regression/regression.ipynb examples/segmentation/hidalgo_segmentation.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/segmentation/hidalgo_segmentation.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/segmentation/hidalgo_segmentation.ipynb examples/segmentation/segmentation.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/segmentation/segmentation.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/segmentation/segmentation.ipynb examples/segmentation/segmentation_with_clasp.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/segmentation/segmentation_with_clasp.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/segmentation/segmentation_with_clasp.ipynb examples/similarity_search/code_speed.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/similarity_search/code_speed.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/similarity_search/code_speed.ipynb examples/similarity_search/distance_profiles.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/similarity_search/distance_profiles.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/similarity_search/distance_profiles.ipynb examples/similarity_search/similarity_search.ipynb:5: [broken] 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https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/transformations/feature_extraction_with_tsfresh.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/transformations/feature_extraction_with_tsfresh.ipynb examples/transformations/minirocket.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/transformations/minirocket.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/transformations/minirocket.ipynb examples/transformations/resizing.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/transformations/resizing.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/transformations/resizing.ipynb examples/transformations/rocket.ipynb:5: [broken] 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https://nbsphinx.readthedocs.io/en/0.9.5/ examples/utils/preprocessing.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/utils/preprocessing.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/utils/preprocessing.ipynb developer_guide/coding_standards.md:27: [broken] https://numpydoc.readthedocs.io/en/latest/format.html#docstring-standard%3E: Anchor 'docstring-standard%3E' not found about.md:87: [redirected with Found] https://readthedocs.org to https://about.readthedocs.com?ref=readthedocs.org api_reference/auto_generated/aeon.clustering.TimeSeriesKernelKMeans.rst:44: [broken] https://scikit-learn.org/stable/glossary.html#term-n-jobs: Anchor 'term-n-jobs' not found contributing/reporting_bugs.md:25: [redirected with Found] https://stackoverflow.com/help/mcve to https://stackoverflow.com/help/minimal-reproducible-example examples/datasets/data_loading.ipynb:17: [redirected with Found] https://timeeval.readthedocs.io to https://timeeval.readthedocs.io/en/latest/ examples/visualisation/plotting_for_learning_tasks.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/visualisation/plotting_for_learning_tasks.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/visualisation/plotting_for_learning_tasks.ipynb examples/visualisation/plotting_results.ipynb:5: [broken] https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/visualisation/plotting_results.ipynb: 500 Server Error: Internal Server Error for url: https://mybinder.org/v2/gh/aeon-toolkit/aeon/v0.11.1?filepath=examples/visualisation/plotting_results.ipynb examples/transformations/feature_extraction_with_tsfresh.ipynb:11: [redirected with Found] https://tsfresh.readthedocs.io to https://tsfresh.readthedocs.io/en/latest/ 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Suggest a potential alternative/fix

No response

[CodeLionX]

IMO, [redirected with Found] and [redirected permanently] are fine. We sometimes want to benefit from shorter links or dynamic redirects. This drastically reduces the links to consider.

---

Output was generated with the following command (takes ~30min):

pip install ".[all-extras]"
cd docs
make linkcheck
cat _build/linkcheck/output.txt

[TonyBagnall]

yes good to parse the above to prioritise actual broken links, will do it if I get time tomorrow on train