does this package only suitable for 10x Visium data?

aerickso / SpatialInferCNV

Clone Calling from Visium Spatial Transcriptomics of Cancer samples

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does this package only suitable for 10x Visium data? #3

Open aaadc opened 1 year ago

aerickso commented 1 year ago

Hi @aaadc, thank you for your interest.

We published and validated signals using 10x Visium spatial data. The underpinning dependency, inferCNV (https://github.com/broadinstitute/infercnv) was designed for single cell RNAseq. In principle, any barcoded transcript count data can be input to inferCNV and SpatialInferCNV.