Hi ,
Thanks for your usefull package!
But I got ERROR when I ran
`Userguide_10xBreastCancer_infCNV = infercnv::run(Userguide_10xBreastCancer_infCNV,
cutoff=0.1, #(see infercnv::run documentation)
out_dir="./InferCNVrun_outputs",
cluster_by_groups=FALSE, #unsupervised analysis
HMM = FALSE,
denoise=TRUE) #denoising applies noise reduction for the plot`
First, I got Error like:
Error in plot_cnv(infercnv_obj, k_obs_groups = k_obs_groups, cluster_by_groups = cluster_by_groups, :
trying to get slot "expr.data" from an object of a basic class ("list") with no slots
Then, I ran the same code again and got Error like:
Error in names(current_args) %in% names(loaded_options) :
trying to get slot "options" from an object of a basic class ("list") with no slots
Hi , Thanks for your usefull package! But I got ERROR when I ran `Userguide_10xBreastCancer_infCNV = infercnv::run(Userguide_10xBreastCancer_infCNV,
First, I got Error like:
Error in plot_cnv(infercnv_obj, k_obs_groups = k_obs_groups, cluster_by_groups = cluster_by_groups, : trying to get slot "expr.data" from an object of a basic class ("list") with no slots
Then, I ran the same code again and got Error like:
Error in names(current_args) %in% names(loaded_options) : trying to get slot "options" from an object of a basic class ("list") with no slots
Can you help me?
Best wishes.