search

aerickso / SpatialInferCNV

Clone Calling from Visium Spatial Transcriptomics of Cancer samples
55 stars 13 forks source link

Error in simpleLoess(y, x, w, span, degree = degree, parametric = parametric, : span is too small #6

Closed yunbokai closed 1 year ago

yunbokai commented 1 year ago

Hi, I have 3 Visium sections. I ran the same code for them Cancer_infCNV = infercnv::run(T101Cancer_infCNV, cutoff=0.1, #(see infercnv::run documentation ) out_dir="./InferCNVrun_outputs", cluster_by_groups=FALSE, #unsupervised analysis HMM = FALSE, denoise=TRUE) #denoising applies noise reduction for the plot However, 2 of them got "Error in simpleLoess(y, x, w, span, degree = degree, parametric = parametric, : span is too small". Here is my output dir 图片

Best wishes

aerickso commented 1 year ago

Hi! Thank you for your interest.

This sounds like an error with the underlying infercnv dependency: not with spatialinfercnv functions.

Please repost/raise this issue on the infercnv repo: https://github.com/broadinstitute/infercnv/issues

yunbokai commented 1 year ago

Hi! Thank you for your interest.

This sounds like an error with the underlying infercnv dependency: not with spatialinfercnv functions.

Please repost/raise this issue on the infercnv repo: https://github.com/broadinstitute/infercnv/issues

Thanks for your advice!