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aerospaceresearch / orbitdeterminator

determination of satellite orbits and more
MIT License
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pytest fail after installing orbitdeterminator on MacPro (2019) #197

Open OrbitalMechanic opened 4 years ago

OrbitalMechanic commented 4 years ago

Attempting to install Orbitdeterminator on a Mac Pro (2019) running Mac OS X Catalina (10.15.6) under the Anaconda environment.

I began the installation by creating an environment for Orbitdeterminator called OrbDet under Python 3.6. The installation was successful as depicted in the listing that follows.

Last login: Fri Aug 14 01:42:03 on ttys000
(base) user@Samuels-Mac-Pro ~ % conda create -n OrbDet python=3.6
Collecting package metadata (current_repodata.json): done
Solving environment: done

## Package Plan ##

  environment location: /Users/user/opt/anaconda3/envs/OrbDet

  added / updated specs:
    - python=3.6

The following NEW packages will be INSTALLED:

  ca-certificates    conda-forge/osx-64::ca-certificates-2020.6.20-hecda079_0
  certifi            conda-forge/osx-64::certifi-2020.6.20-py36h9f0ad1d_0
  libcxx             conda-forge/osx-64::libcxx-10.0.1-h5f48129_0
  libffi             conda-forge/osx-64::libffi-3.2.1-hb1e8313_1007
  ncurses            conda-forge/osx-64::ncurses-6.2-hb1e8313_1
  openssl            conda-forge/osx-64::openssl-1.1.1g-haf1e3a3_1
  pip                conda-forge/noarch::pip-20.2.2-py_0
  python             conda-forge/osx-64::python-3.6.11-hc38f9c5_2_cpython
  python_abi         conda-forge/osx-64::python_abi-3.6-1_cp36m
  readline           conda-forge/osx-64::readline-8.0-h0678c8f_2
  setuptools         conda-forge/osx-64::setuptools-49.6.0-py36h9f0ad1d_0
  sqlite             conda-forge/osx-64::sqlite-3.32.3-h960bd1c_1
  tk                 conda-forge/osx-64::tk-8.6.10-hb0a8c7a_0
  wheel              conda-forge/noarch::wheel-0.34.2-py_1
  xz                 conda-forge/osx-64::xz-5.2.5-haf1e3a3_1
  zlib               conda-forge/osx-64::zlib-1.2.11-1007

Proceed ([y]/n)? y

Preparing transaction: done
Verifying transaction: done
Executing transaction: done
#
# To activate this environment, use
#
#     $ conda activate OrbDet
#
# To deactivate an active environment, use
#
#     $ conda deactivate

(base) user@Samuels-Mac-Pro ~ % conda activate OrbDet               
(OrbDet) user@Samuels-Mac-Pro ~ % pip install llvmlite --prefer-binary
Collecting llvmlite
  Using cached llvmlite-0.34.0-cp36-cp36m-macosx_10_9_x86_64.whl (18.4 MB)
Installing collected packages: llvmlite
Successfully installed llvmlite-0.34.0
(OrbDet) user@Samuels-Mac-Pro ~ % git clone https://github.com/aerospaceresearch/orbitdeterminator/
Cloning into 'orbitdeterminator'...
remote: Enumerating objects: 350, done.
remote: Counting objects: 100% (350/350), done.
remote: Compressing objects: 100% (286/286), done.
remote: Total 4319 (delta 233), reused 166 (delta 56), pack-reused 3969
Receiving objects: 100% (4319/4319), 26.82 MiB | 32.27 MiB/s, done.
Resolving deltas: 100% (2919/2919), done.
(OrbDet) user@Samuels-Mac-Pro ~ % cd orbitdeterminator
(OrbDet) user@Samuels-Mac-Pro orbitdeterminator % conda install pykep==2.1
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): done
Solving environment: done

## Package Plan ##

  environment location: /Users/user/opt/anaconda3/envs/OrbDet

  added / updated specs:
    - pykep==2.1

The following NEW packages will be INSTALLED:

  boost              conda-forge/osx-64::boost-1.66.0-py36_1
  boost-cpp          conda-forge/osx-64::boost-cpp-1.66.0-1
  bzip2              conda-forge/osx-64::bzip2-1.0.8-haf1e3a3_2
  icu                conda-forge/osx-64::icu-58.2-h0a44026_1000
  libblas            conda-forge/osx-64::libblas-3.8.0-17_openblas
  libcblas           conda-forge/osx-64::libcblas-3.8.0-17_openblas
  libgfortran        conda-forge/osx-64::libgfortran-4.0.0-2
  liblapack          conda-forge/osx-64::liblapack-3.8.0-17_openblas
  libopenblas        conda-forge/osx-64::libopenblas-0.3.10-openmp_h63d9170_4
  llvm-openmp        conda-forge/osx-64::llvm-openmp-10.0.1-h28b9765_0
  numpy              conda-forge/osx-64::numpy-1.19.1-py36h4a66613_0
  pykep              conda-forge/osx-64::pykep-2.1-py36_1

Proceed ([y]/n)? y

Preparing transaction: done
Verifying transaction: done
Executing transaction: done
(OrbDet) user@Samuels-Mac-Pro orbitdeterminator % conda install matplotlib
Collecting package metadata (current_repodata.json): done
Solving environment: done

## Package Plan ##

  environment location: /Users/user/opt/anaconda3/envs/OrbDet

  added / updated specs:
    - matplotlib

The following NEW packages will be INSTALLED:

  cycler             conda-forge/noarch::cycler-0.10.0-py_2
  freetype           conda-forge/osx-64::freetype-2.10.2-h8da9a1a_0
  jpeg               conda-forge/osx-64::jpeg-9d-h0b31af3_0
  kiwisolver         conda-forge/osx-64::kiwisolver-1.2.0-py36h863e41a_0
  lcms2              conda-forge/osx-64::lcms2-2.11-h174193d_0
  libpng             conda-forge/osx-64::libpng-1.6.37-hb0a8c7a_2
  libtiff            conda-forge/osx-64::libtiff-4.1.0-h2ae36a8_6
  libwebp-base       conda-forge/osx-64::libwebp-base-1.1.0-h0b31af3_3
  lz4-c              conda-forge/osx-64::lz4-c-1.9.2-h4a8c4bd_1
  matplotlib         conda-forge/osx-64::matplotlib-3.3.0-1
  matplotlib-base    conda-forge/osx-64::matplotlib-base-3.3.0-py36h534ab7b_1
  olefile            conda-forge/noarch::olefile-0.46-py_0
  pillow             conda-forge/osx-64::pillow-7.2.0-py36h2ae5dfa_1
  pyparsing          conda-forge/noarch::pyparsing-2.4.7-pyh9f0ad1d_0
  python-dateutil    conda-forge/noarch::python-dateutil-2.8.1-py_0
  six                conda-forge/noarch::six-1.15.0-pyh9f0ad1d_0
  tornado            conda-forge/osx-64::tornado-6.0.4-py36h37b9a7d_1
  zstd               conda-forge/osx-64::zstd-1.4.5-h0384e3a_2

Proceed ([y]/n)? y

Preparing transaction: done
Verifying transaction: done
Executing transaction: done
(OrbDet) user@Samuels-Mac-Pro orbitdeterminator % pip install -r requirements.txt

Collecting https://cdn.mysql.com/Downloads/Connector-Python/mysql-connector-python-1.0.12.tar.gz (from -r requirements.txt (line 17))
  Using cached https://cdn.mysql.com/Downloads/Connector-Python/mysql-connector-python-1.0.12.tar.gz (230 kB)
Collecting astropy==3.0.3
  Using cached astropy-3.0.3-cp36-cp36m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl (7.5 MB)
Collecting attrs==17.4.0
  Using cached attrs-17.4.0-py2.py3-none-any.whl (31 kB)
Collecting colorama==0.3.9
  Using cached colorama-0.3.9-py2.py3-none-any.whl (20 kB)
Requirement already satisfied: cycler==0.10.0 in /Users/user/opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages (from -r requirements.txt (line 4)) (0.10.0)
Collecting numpy==1.15.4
  Using cached numpy-1.15.4-cp36-cp36m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl (24.5 MB)
Collecting pluggy==0.6.0
  Using cached pluggy-0.6.0-py3-none-any.whl (13 kB)
Collecting poliastro==0.9.1
  Using cached poliastro-0.9.1-py3-none-any.whl (76 kB)
Collecting py==1.5.2
  Using cached py-1.5.2-py2.py3-none-any.whl (88 kB)
Collecting pyparsing==2.2.0
  Using cached pyparsing-2.2.0-py2.py3-none-any.whl (56 kB)
Collecting pytest==3.4.0
  Using cached pytest-3.4.0-py2.py3-none-any.whl (188 kB)
Collecting python-dateutil==2.7.3
  Using cached python_dateutil-2.7.3-py2.py3-none-any.whl (211 kB)
Collecting pytz==2018.3
  Using cached pytz-2018.3-py2.py3-none-any.whl (509 kB)
Collecting scipy==1.0.0
  Using cached scipy-1.0.0-cp36-cp36m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl (16.7 MB)
Processing /Users/user/Library/Caches/pip/wheels/19/1b/70/aa7b902255109898392ec189d0de477d9222dcc49eaea815f1/sgp4-1.4-py3-none-any.whl
Collecting six==1.11.0
  Using cached six-1.11.0-py2.py3-none-any.whl (10 kB)
Collecting beautifulsoup4==4.6
  Using cached beautifulsoup4-4.6.0-py3-none-any.whl (86 kB)
Collecting requests
  Using cached requests-2.24.0-py2.py3-none-any.whl (61 kB)
Collecting inquirer
  Using cached inquirer-2.7.0-py2.py3-none-any.whl (31 kB)
Requirement already satisfied: matplotlib>=2.0 in /Users/user/opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages (from poliastro==0.9.1->-r requirements.txt (line 7)) (3.3.0)
Collecting numba>=0.25; implementation_name == "cpython"
  Using cached numba-0.50.1-cp36-cp36m-macosx_10_14_x86_64.whl (2.1 MB)
Collecting pandas
  Using cached pandas-1.1.0-cp36-cp36m-macosx_10_9_x86_64.whl (10.6 MB)
Collecting plotly
  Using cached plotly-4.9.0-py2.py3-none-any.whl (12.9 MB)
Processing /Users/user/Library/Caches/pip/wheels/48/67/ed/21bb8af8724f9889e7f1f0bb77093a9a71b3f9296574a14837/jplephem-2.14-py3-none-any.whl
Processing /Users/user/Library/Caches/pip/wheels/7f/e1/15/2f09f04a8f604d9579d65109f0d034790c581b88515136235f/CALLHORIZONS-1.1.1-py3-none-any.whl
Requirement already satisfied: setuptools in /Users/user/opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages (from pytest==3.4.0->-r requirements.txt (line 10)) (49.6.0.post20200814)
Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1
  Using cached urllib3-1.25.10-py2.py3-none-any.whl (127 kB)
Collecting idna<3,>=2.5
  Using cached idna-2.10-py2.py3-none-any.whl (58 kB)
Collecting chardet<4,>=3.0.2
  Using cached chardet-3.0.4-py2.py3-none-any.whl (133 kB)
Requirement already satisfied: certifi>=2017.4.17 in /Users/user/opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages (from requests->-r requirements.txt (line 18)) (2020.6.20)
Collecting python-editor==1.0.4
  Using cached python_editor-1.0.4-py3-none-any.whl (4.9 kB)
Collecting readchar==2.0.1
  Using cached readchar-2.0.1-py3-none-any.whl (6.9 kB)
Collecting blessed==1.17.6
  Using cached blessed-1.17.6-py2.py3-none-any.whl (76 kB)
Requirement already satisfied: kiwisolver>=1.0.1 in /Users/user/opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages (from matplotlib>=2.0->poliastro==0.9.1->-r requirements.txt (line 7)) (1.2.0)
Requirement already satisfied: pillow>=6.2.0 in /Users/user/opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages (from matplotlib>=2.0->poliastro==0.9.1->-r requirements.txt (line 7)) (7.2.0)
Collecting llvmlite<0.34,>=0.33.0.dev0
  Using cached llvmlite-0.33.0-cp36-cp36m-macosx_10_9_x86_64.whl (17.3 MB)
Processing /Users/user/Library/Caches/pip/wheels/ac/cb/8a/b27bf6323e2f4c462dcbf77d70b7c5e7868a7fbe12871770cf/retrying-1.3.3-py3-none-any.whl
Collecting wcwidth>=0.1.4
  Using cached wcwidth-0.2.5-py2.py3-none-any.whl (30 kB)
Building wheels for collected packages: mysql-connector-python
  Building wheel for mysql-connector-python (setup.py) ... done
  Created wheel for mysql-connector-python: filename=mysql_connector_python-1.0.12-py3-none-any.whl size=67307 sha256=a45534493ebd63d5aecd2e38b411422ab894e7fd60418f801b3fd578717aee3c
  Stored in directory: /Users/user/Library/Caches/pip/wheels/e4/e6/5b/da539652b3aff77375c113aecbfa951e2538f94ca30a2caa38
Successfully built mysql-connector-python
Installing collected packages: numpy, astropy, attrs, colorama, pluggy, beautifulsoup4, llvmlite, numba, pytz, six, python-dateutil, pandas, scipy, urllib3, idna, chardet, requests, retrying, plotly, jplephem, callhorizons, poliastro, py, pyparsing, pytest, sgp4, python-editor, readchar, wcwidth, blessed, inquirer, mysql-connector-python
  Attempting uninstall: numpy
    Found existing installation: numpy 1.19.1
    Uninstalling numpy-1.19.1:
      Successfully uninstalled numpy-1.19.1
  Attempting uninstall: llvmlite
    Found existing installation: llvmlite 0.34.0
    Uninstalling llvmlite-0.34.0:
      Successfully uninstalled llvmlite-0.34.0
  Attempting uninstall: six
    Found existing installation: six 1.15.0
    Uninstalling six-1.15.0:
      Successfully uninstalled six-1.15.0
  Attempting uninstall: python-dateutil
    Found existing installation: python-dateutil 2.8.1
    Uninstalling python-dateutil-2.8.1:
      Successfully uninstalled python-dateutil-2.8.1
  Attempting uninstall: pyparsing
    Found existing installation: pyparsing 2.4.7
    Uninstalling pyparsing-2.4.7:
      Successfully uninstalled pyparsing-2.4.7
Successfully installed astropy-3.0.3 attrs-17.4.0 beautifulsoup4-4.6.0 blessed-1.17.6 callhorizons-1.1.1 chardet-3.0.4 colorama-0.3.9 idna-2.10 inquirer-2.7.0 jplephem-2.14 llvmlite-0.33.0 mysql-connector-python-1.0.12 numba-0.50.1 numpy-1.15.4 pandas-1.1.0 plotly-4.9.0 pluggy-0.6.0 poliastro-0.9.1 py-1.5.2 pyparsing-2.2.0 pytest-3.4.0 python-dateutil-2.7.3 python-editor-1.0.4 pytz-2018.3 readchar-2.0.1 requests-2.24.0 retrying-1.3.3 scipy-1.0.0 sgp4-1.4 six-1.11.0 urllib3-1.25.10 wcwidth-0.2.5
(OrbDet) user@Samuels-Mac-Pro orbitdeterminator %

The problem occurs when I attempt to test the install as follows.

(OrbDet) user@Samuels-Mac-Pro orbitdeterminator % pytest
==================================================================================================================== test session starts =====================================================================================================================
platform darwin -- Python 3.6.11, pytest-3.4.0, py-1.5.2, pluggy-0.6.0
rootdir: /Users/user/orbitdeterminator, inifile:
collected 15 items / 6 errors                                                                                                                                                                                                                                

=========================================================================================================================== ERRORS ===========================================================================================================================
______________________________________________________________________________________________ ERROR collecting orbitdeterminator/tests/test_check_keplerian.py ______________________________________________________________________________________________
ImportError while importing test module '/Users/user/orbitdeterminator/orbitdeterminator/tests/test_check_keplerian.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
orbitdeterminator/tests/test_check_keplerian.py:4: in <module>
    from orbitdeterminator.kep_determination import lamberts_kalman
orbitdeterminator/kep_determination/lamberts_kalman.py:12: in <module>
    import matplotlib.pylab as plt
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/pylab.py:35: in <module>
    from matplotlib import cbook, mlab, pyplot as plt
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/pyplot.py:36: in <module>
    import matplotlib.colorbar
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/colorbar.py:44: in <module>
    import matplotlib.contour as contour
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/contour.py:17: in <module>
    import matplotlib.text as text
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/text.py:16: in <module>
    from .textpath import TextPath  # Unused, but imported by others.
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/textpath.py:11: in <module>
    from matplotlib.mathtext import MathTextParser
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/mathtext.py:27: in <module>
    from PIL import Image
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/PIL/Image.py:94: in <module>
    from . import _imaging as core
E   ImportError: dlopen(/Users/user/opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/PIL/_imaging.cpython-36m-darwin.so, 2): Library not loaded: @rpath/libtiff.5.dylib
E     Referenced from: /Users/user/opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/PIL/_imaging.cpython-36m-darwin.so
E     Reason: Incompatible library version: _imaging.cpython-36m-darwin.so requires version 11.0.0 or later, but libtiff.5.dylib provides version 10.0.0
________________________________________________________________________________________________ ERROR collecting orbitdeterminator/tests/test_ellipse_fit.py ________________________________________________________________________________________________
ImportError while importing test module '/Users/user/orbitdeterminator/orbitdeterminator/tests/test_ellipse_fit.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
orbitdeterminator/tests/test_ellipse_fit.py:11: in <module>
    from kep_determination.ellipse_fit import determine_kep
orbitdeterminator/kep_determination/ellipse_fit.py:8: in <module>
    import matplotlib.pyplot as plt
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/pyplot.py:36: in <module>
    import matplotlib.colorbar
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/colorbar.py:44: in <module>
    import matplotlib.contour as contour
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/contour.py:17: in <module>
    import matplotlib.text as text
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/text.py:16: in <module>
    from .textpath import TextPath  # Unused, but imported by others.
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/textpath.py:11: in <module>
    from matplotlib.mathtext import MathTextParser
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/mathtext.py:27: in <module>
    from PIL import Image
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/PIL/Image.py:94: in <module>
    from . import _imaging as core
E   ImportError: dlopen(/Users/user/opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/PIL/_imaging.cpython-36m-darwin.so, 2): Library not loaded: @rpath/libtiff.5.dylib
E     Referenced from: /Users/user/opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/PIL/_imaging.cpython-36m-darwin.so
E     Reason: Incompatible library version: _imaging.cpython-36m-darwin.so requires version 11.0.0 or later, but libtiff.5.dylib provides version 10.0.0
__________________________________________________________________________________________________ ERROR collecting orbitdeterminator/tests/test_filters.py __________________________________________________________________________________________________
ImportError while importing test module '/Users/user/orbitdeterminator/orbitdeterminator/tests/test_filters.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
orbitdeterminator/tests/test_filters.py:5: in <module>
    from orbitdeterminator.filters import triple_moving_average as tma
orbitdeterminator/filters/triple_moving_average.py:11: in <module>
    import matplotlib.pyplot as plt
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/pyplot.py:36: in <module>
    import matplotlib.colorbar
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/colorbar.py:44: in <module>
    import matplotlib.contour as contour
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/contour.py:17: in <module>
    import matplotlib.text as text
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/text.py:16: in <module>
    from .textpath import TextPath  # Unused, but imported by others.
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/textpath.py:11: in <module>
    from matplotlib.mathtext import MathTextParser
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/mathtext.py:27: in <module>
    from PIL import Image
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/PIL/Image.py:94: in <module>
    from . import _imaging as core
E   ImportError: dlopen(/Users/user/opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/PIL/_imaging.cpython-36m-darwin.so, 2): Library not loaded: @rpath/libtiff.5.dylib
E     Referenced from: /Users/user/opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/PIL/_imaging.cpython-36m-darwin.so
E     Reason: Incompatible library version: _imaging.cpython-36m-darwin.so requires version 11.0.0 or later, but libtiff.5.dylib provides version 10.0.0
__________________________________________________________________________________________________ ERROR collecting orbitdeterminator/tests/test_kalman.py ___________________________________________________________________________________________________
ImportError while importing test module '/Users/user/orbitdeterminator/orbitdeterminator/tests/test_kalman.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
orbitdeterminator/tests/test_kalman.py:4: in <module>
    from orbitdeterminator.kep_determination import lamberts_kalman
orbitdeterminator/kep_determination/lamberts_kalman.py:12: in <module>
    import matplotlib.pylab as plt
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/pylab.py:35: in <module>
    from matplotlib import cbook, mlab, pyplot as plt
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/pyplot.py:36: in <module>
    import matplotlib.colorbar
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/colorbar.py:44: in <module>
    import matplotlib.contour as contour
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/contour.py:17: in <module>
    import matplotlib.text as text
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/text.py:16: in <module>
    from .textpath import TextPath  # Unused, but imported by others.
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/textpath.py:11: in <module>
    from matplotlib.mathtext import MathTextParser
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/mathtext.py:27: in <module>
    from PIL import Image
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/PIL/Image.py:94: in <module>
    from . import _imaging as core
E   ImportError: dlopen(/Users/user/opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/PIL/_imaging.cpython-36m-darwin.so, 2): Library not loaded: @rpath/libtiff.5.dylib
E     Referenced from: /Users/user/opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/PIL/_imaging.cpython-36m-darwin.so
E     Reason: Incompatible library version: _imaging.cpython-36m-darwin.so requires version 11.0.0 or later, but libtiff.5.dylib provides version 10.0.0
______________________________________________________________________________________________ ERROR collecting orbitdeterminator/tests/test_lamberts_kalman.py ______________________________________________________________________________________________
ImportError while importing test module '/Users/user/orbitdeterminator/orbitdeterminator/tests/test_lamberts_kalman.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
orbitdeterminator/tests/test_lamberts_kalman.py:4: in <module>
    from orbitdeterminator.kep_determination import (lamberts_kalman, interpolation)
orbitdeterminator/kep_determination/lamberts_kalman.py:12: in <module>
    import matplotlib.pylab as plt
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/pylab.py:35: in <module>
    from matplotlib import cbook, mlab, pyplot as plt
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/pyplot.py:36: in <module>
    import matplotlib.colorbar
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/colorbar.py:44: in <module>
    import matplotlib.contour as contour
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/contour.py:17: in <module>
    import matplotlib.text as text
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/text.py:16: in <module>
    from .textpath import TextPath  # Unused, but imported by others.
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/textpath.py:11: in <module>
    from matplotlib.mathtext import MathTextParser
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/mathtext.py:27: in <module>
    from PIL import Image
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/PIL/Image.py:94: in <module>
    from . import _imaging as core
E   ImportError: dlopen(/Users/user/opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/PIL/_imaging.cpython-36m-darwin.so, 2): Library not loaded: @rpath/libtiff.5.dylib
E     Referenced from: /Users/user/opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/PIL/_imaging.cpython-36m-darwin.so
E     Reason: Incompatible library version: _imaging.cpython-36m-darwin.so requires version 11.0.0 or later, but libtiff.5.dylib provides version 10.0.0
_____________________________________________________________________________________________ ERROR collecting orbitdeterminator/tests/test_orbit_trajectory.py ______________________________________________________________________________________________
ImportError while importing test module '/Users/user/orbitdeterminator/orbitdeterminator/tests/test_orbit_trajectory.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
orbitdeterminator/tests/test_orbit_trajectory.py:4: in <module>
    from orbitdeterminator.kep_determination import lamberts_kalman
orbitdeterminator/kep_determination/lamberts_kalman.py:12: in <module>
    import matplotlib.pylab as plt
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/pylab.py:35: in <module>
    from matplotlib import cbook, mlab, pyplot as plt
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/pyplot.py:36: in <module>
    import matplotlib.colorbar
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/colorbar.py:44: in <module>
    import matplotlib.contour as contour
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/contour.py:17: in <module>
    import matplotlib.text as text
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/text.py:16: in <module>
    from .textpath import TextPath  # Unused, but imported by others.
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/textpath.py:11: in <module>
    from matplotlib.mathtext import MathTextParser
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/matplotlib/mathtext.py:27: in <module>
    from PIL import Image
../opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/PIL/Image.py:94: in <module>
    from . import _imaging as core
E   ImportError: dlopen(/Users/user/opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/PIL/_imaging.cpython-36m-darwin.so, 2): Library not loaded: @rpath/libtiff.5.dylib
E     Referenced from: /Users/user/opt/anaconda3/envs/OrbDet/lib/python3.6/site-packages/PIL/_imaging.cpython-36m-darwin.so
E     Reason: Incompatible library version: _imaging.cpython-36m-darwin.so requires version 11.0.0 or later, but libtiff.5.dylib provides version 10.0.0
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Interrupted: 6 errors during collection !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
================================================================================================================== 6 error in 7.79 seconds ===================================================================================================================
(OrbDet) user@Samuels-Mac-Pro orbitdeterminator %

Did I miss a step in the install, or what?

Please advise.

Sam Dupree.

OrbitalMechanic commented 4 years ago

I attempted to install Orbitdeterminator under Python 3.7. I was successful at installing Orbitdeterminator from the test I ran:

(xOrbDet) user@Samuels-Mac-Pro orbitdeterminator % pytest
======================================================================================== test session starts ========================================================================================
platform darwin -- Python 3.7.8, pytest-5.4.3, py-1.9.0, pluggy-0.13.1
rootdir: /Users/user/orbitdeterminator
plugins: timeout-1.3.4, doctestplus-0.7.0, arraydiff-0.3, hypothesis-5.20.2, remotedata-0.3.1, openfiles-0.5.0, astropy-header-0.1.2
collected 26 items                                                                                                                                                                                  

orbitdeterminator/tests/test_check_keplerian.py ....                                                                                                                                          [ 15%]
orbitdeterminator/tests/test_ellipse_fit.py .                                                                                                                                                 [ 19%]
orbitdeterminator/tests/test_filters.py .                                                                                                                                                     [ 23%]
orbitdeterminator/tests/test_gibbsMethod.py ........                                                                                                                                          [ 53%]
orbitdeterminator/tests/test_input_transf.py .                                                                                                                                                [ 57%]
orbitdeterminator/tests/test_kalman.py ..                                                                                                                                                     [ 65%]
orbitdeterminator/tests/test_lamberts_kalman.py .                                                                                                                                             [ 69%]
orbitdeterminator/tests/test_orbit_trajectory.py ..                                                                                                                                           [ 76%]
orbitdeterminator/tests/test_sav_golay.py ...                                                                                                                                                 [ 88%]
orbitdeterminator/tests/test_sgp4.py ..                                                                                                                                                       [ 96%]
orbitdeterminator/tests/test_statekep_kepstate.py .                                                                                                                                           [100%]

========================================================================================= warnings summary ==========================================================================================
orbitdeterminator/kep_determination/gibbsMethod.py:141
  /Users/user/orbitdeterminator/orbitdeterminator/kep_determination/gibbsMethod.py:141: DeprecationWarning: invalid escape sequence \s
    r1 = self.convert_list(re.split('\t|\s', str1))

orbitdeterminator/kep_determination/gibbsMethod.py:142
  /Users/user/orbitdeterminator/orbitdeterminator/kep_determination/gibbsMethod.py:142: DeprecationWarning: invalid escape sequence \s
    r2 = self.convert_list(re.split('\t|\s', str2))

orbitdeterminator/kep_determination/gibbsMethod.py:157
  /Users/user/orbitdeterminator/orbitdeterminator/kep_determination/gibbsMethod.py:157: DeprecationWarning: invalid escape sequence \s
    r3 = self.convert_list(re.split('\t|\s', str3))

-- Docs: https://docs.pytest.org/en/latest/warnings.html
================================================================================== 26 passed, 3 warnings in 6.66s ===================================================================================
(xOrbDet) user@Samuels-Mac-Pro orbitdeterminator % conda list
# packages in environment at /Users/user/opt/anaconda3/envs/xOrbDet:

The entire installation processed is captured in the attached file. My next step will be running the tutorial in the documentation. However, I still have questions concerning the three warning issued.

Please advise.

Sam Dupree

xOrbDet install.txt

hornig commented 3 years ago

Hi @OrbitalMechanic, as far as I was able to see, the tests had paths leading to nowhere. I opened this PR for it https://github.com/aerospaceresearch/orbitdeterminator/pull/206 and it solved (at least my) problems. I still need to check for the check_sgp4 for what that is used https://github.com/aerospaceresearch/orbitdeterminator/issues/207 But I think it was these artifacts I also see in your copied logs.

For example the lamberts_kalman.py is in .kep_determinator and adding the orbitdeterminator before caused problems for me. from orbitdeterminator.kep_determination import lamberts_kalman