aertslab / CREsted

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Add example dataset loading #5

Closed casblaauw closed 3 months ago

casblaauw commented 4 months ago

Adds crested.get_dataset(), currently with support for BICCN topic bed and peak bigwig datasets. Example dataset names (currently "mouse_cortex_bed"/"mouse_cortex_bigwig") can still be changed, but do remember to change introduction.ipynb as well.

Open questions/to-do:

LukasMahieu commented 3 months ago

I'm already merging this since there are no conflicts anyway and I want to test with new main branch functionality. Feel free to continue working on this in this branch and create a new PR later.