I have recently ran GRNBoost2 during my pySCENIC pipeline and was wondering how I could get the visualization tree diagrams?
This is the code that I used to get the grnboost2 results:
pyscenic grn geneexp_scenic.loom allTFs_hg38.txt --method grnboost2 --output adj.tsv --num_workers 20
The output file adj.tsv has the 3 columns named: TF, Target, and Importance.
I am wondering how I can create the tree diagrams and heat maps from the adj.tsv file?
Hello,
I have recently ran GRNBoost2 during my pySCENIC pipeline and was wondering how I could get the visualization tree diagrams?
This is the code that I used to get the grnboost2 results: pyscenic grn geneexp_scenic.loom allTFs_hg38.txt --method grnboost2 --output adj.tsv --num_workers 20
The output file adj.tsv has the 3 columns named: TF, Target, and Importance.
I am wondering how I can create the tree diagrams and heat maps from the adj.tsv file?
Thanks!