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aertslab / RcisTarget

RcisTarget: Transcription factor binding motif enrichment
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Cannot install RcisTarget! #8

Closed saeedfc closed 5 years ago

saeedfc commented 6 years ago

Hi, I have pasted my console part below. I cannot install the package from bioconductor. I wanted to use scenic and went with this source("https://bioconductor.org/biocLite.R") biocLite(c("GENIE3", "RcisTarget", "AUCell"))

But it showed that rcistarget is not installed(other two packages were succesfully installed). So tried installing 'RcisTarget' individually. #installing from bioconductor

> biocLite(pkgs = "RcisTarget") BioC_mirror: https://bioconductor.org Using Bioconductor 3.6 (BiocInstaller 1.28.0), R 3.4.3 (2017-11-30). Installing package(s) ‘RcisTarget’ Warning message: package ‘RcisTarget’ is not available (for R version 3.4.3)

installing from file

install.packages("~/R/RcisTarget_1.0.2.tar.gz") Warningin install.packages : package ‘~/R/RcisTarget_1.0.2.tar.gz’ is not available (for R version 3.4.3)

Any idea what is going on here? Thank you very much for the help

Ngort commented 6 years ago

Same issue!

s-aibar commented 5 years ago

Hello,

to install it from file you need to set repos=NULL (otherwise it tries to find in in the remote repositories): install.packages("~/R/RcisTarget_1.0.2.tar.gz", repos=NULL)

ncedi12 commented 9 months ago

Hi there, I'm also struggling to install RcisTarget

I work with R/4.3.0 and biocManager version 3.18

your package seems to be configured to download with boconductor 3.18 but I get this error

package 'RcisTarget' is not available for Bioconductor version '3.18'

XXiaoyueli commented 8 months ago

Hi there, I'm also struggling to install RcisTarget

I work with R/4.3.0 and biocManager version 3.18

your package seems to be configured to download with boconductor 3.18 but I get this error

package 'RcisTarget' is not available for Bioconductor version '3.18'

same issue

XXiaoyueli commented 8 months ago

Hi there, I'm also struggling to install RcisTarget

I work with R/4.3.0 and biocManager version 3.18

your package seems to be configured to download with boconductor 3.18 but I get this error

package 'RcisTarget' is not available for Bioconductor version '3.18'

I tried these code and it works for me:

Install remotes package if you haven't already

install.packages("remotes")

Load the remotes package

library(remotes)

Install RcisTarget from GitHub

remotes::install_github("aertslab/RcisTarget")