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aertslab / SCENIC

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
http://scenic.aertslab.org
GNU General Public License v3.0
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cisTarget databases related papers #115

Closed MarcoMatta closed 2 years ago

MarcoMatta commented 4 years ago

Hi, where Can I find related paper or explanation of cisTarget databases?

https://resources.aertslab.org/cistarget/

thanks

ghuls commented 4 years ago

PWM-based whole-genome rankings across species (gene-based): https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003731

Region-scoring and ranking: https://academic.oup.com/nar/article/43/W1/W57/2467895