Generating feather file from motif list

aertslab / SCENIC

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

http://scenic.aertslab.org

GNU General Public License v3.0

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Generating feather file from motif list #116

Closed kashiff007 closed 2 years ago

kashiff007 commented 4 years ago

Dear SCENIC team,

I am working with completely new organisms. I have the annotation file and gene expression, and now I want to use SCENIC to cluster the based on expression and motif present in promoter. I am having hard time with motif database. I have the motif list in promoter region but I am unable to convert it to 'feather' files, which can be used in SCENIC.

I will be grateful if you could help me regarding this issue. Thanks

s-aibar commented 2 years ago

Hello,

We have now created a tutorial on how to create new databases, which can be used to create databases with new settings and new organisms:

https://github.com/aertslab/create_cisTarget_databases

I hope this helps