Error in tfModulesSummary[, 2] : subscript out of bounds

aertslab / SCENIC

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

http://scenic.aertslab.org

GNU General Public License v3.0

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Error in tfModulesSummary[, 2] : subscript out of bounds #120

Open yejg2017 opened 4 years ago

yejg2017 commented 4 years ago

When I run runSCENIC_2_createRegulons(scenicOptions),I got the error: Error in tfModulesSummary[, 2] : subscript out of bounds,and I do not know how to fix it,Can you help me?,thanks!

peixiaoya commented 4 years ago

I also have this problem. I analyzed my results, and I think the filterd genes number is too little, so the TFs number would be more little. So after runGenie3, there are only one mudule. Then, error in tfModulesSummary[, 2] : subscript out of bounds. These are my consider.

vkartha commented 2 years ago

Any fix for this? I'm seeing the error on my end as well. I didn't change anything except for the correlation threshold in the previous step (runSCENIC_1_coexNetwork2modules)