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aertslab / SCENIC

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
http://scenic.aertslab.org
GNU General Public License v3.0
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Cannot find cell information named 'seuratCluster (it should be a column of the 'cellInfo') #121

Closed lelesama closed 4 years ago

lelesama commented 4 years ago

colnames(scenicOptions@inputDatasetInfo$cellInfo) [1] "seuratCluster" class(colnames(scenicOptions@inputDatasetInfo$cellInfo)) [1] "character" scenicOptions@inputDatasetInfo$cellInfo seuratCluster AAAGGATAGACATAAC.1 5 AAAGGATGTCAAACGG.1 12 AAAGGGCGTTATGACC.1 12 AAAGTCCCAGATAAAC.1 5 AAAGTCCGTCGTTGGC.1 12 plotTsne_compareSettings(fileNames, scenicOptions, showLegend=FALSE, varName="seuratCluster", cex=.5) Error in plotTsne_compareSettings(fileNames, scenicOptions, showLegend = FALSE, : Cannot find cell information named 'seuratCluster (it should be a column of the 'cellInfo').

@ghuls @KrisDavie @cflerin @steinaerts @juhaa

martin-jeremy commented 3 years ago

Same error here, how didi you solve it ?

SarahMyoblast commented 3 years ago

colnames(scenicOptions@inputDatasetInfo$cellInfo) [1] "seuratCluster" class(colnames(scenicOptions@inputDatasetInfo$cellInfo)) [1] "character" scenicOptions@inputDatasetInfo$cellInfo seuratCluster AAAGGATAGACATAAC.1 5 AAAGGATGTCAAACGG.1 12 AAAGGGCGTTATGACC.1 12 AAAGTCCCAGATAAAC.1 5 AAAGTCCGTCGTTGGC.1 12 plotTsne_compareSettings(fileNames, scenicOptions, showLegend=FALSE, varName="seuratCluster", cex=.5) Error in plotTsne_compareSettings(fileNames, scenicOptions, showLegend = FALSE, : Cannot find cell information named 'seuratCluster (it should be a column of the 'cellInfo').

@ghuls @KrisDavie @cflerin @steinaerts @juhaa

I have the same error. Did you solve it ?