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aertslab / SCENIC

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
http://scenic.aertslab.org
GNU General Public License v3.0
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Using SCENIC for rat #133

Closed singcell closed 2 years ago

singcell commented 4 years ago

I wanted to use this tool in Rat. Both rat and mouse has same motif databases however location of genomic coordinates of motifs varies. Can I still use SCENIC for rat.

s-aibar commented 2 years ago

Hello,

We have now created a tutorial on how to create new databases, which can be used to create databases for new organisms:

https://github.com/aertslab/create_cisTarget_databases

I hope this helps