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aertslab / SCENIC

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
http://scenic.aertslab.org
GNU General Public License v3.0
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runSCENIC_2_createRegulons #134

Closed 1185958508 closed 2 years ago

1185958508 commented 4 years ago

when i run this second step: runSCENIC_2_createRegulons(scenicOptions, coexMethod=NULL) RcisTarget: Prunning targets Error in file(con, "w") : 所有链结都已在运行 how do i resolve this bug?

ureyandy2009 commented 4 years ago

i meet the same question with you, i guess this is because of the environment(win10) you run r. you can try run it on python.

1185958508 commented 4 years ago

Thank you very much,I will try it.

------------------ 原始邮件 ------------------ 发件人: "ureyandy2009"<notifications@github.com>; 发送时间: 2020年7月1日(星期三) 上午9:18 收件人: "aertslab/SCENIC"<SCENIC@noreply.github.com>; 抄送: "qai"<1185958508@qq.com>;"Author"<author@noreply.github.com>; 主题: Re: [aertslab/SCENIC] runSCENIC_2_createRegulons (#134)

i meet the same question with you, i guess this is because of the environment(win10) you run r. you can try run it on python.

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ureyandy2009 commented 4 years ago

Thank you very much,I will try it. … ------------------ 原始邮件 ------------------ 发件人: "ureyandy2009"<notifications@github.com>; 发送时间: 2020年7月1日(星期三) 上午9:18 收件人: "aertslab/SCENIC"<SCENIC@noreply.github.com>; 抄送: "qai"<1185958508@qq.com>;"Author"<author@noreply.github.com>; 主题: Re: [aertslab/SCENIC] runSCENIC_2_createRegulons (#134) i meet the same question with you, i guess this is because of the environment(win10) you run r. you can try run it on python. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe.

another way is use r on linux, i'm trying it. and i will tell you if it works.

ureyandy2009 commented 4 years ago

both scenic on r and pyscenic on python can work in linux. So i guess it's just the environment matters.

1185958508 commented 4 years ago

Did you get the ideal results by linux scenic ? 

------------------ 原始邮件 ------------------ 发件人: "aertslab/SCENIC" <notifications@github.com>; 发送时间: 2020年7月11日(星期六) 上午10:09 收件人: "aertslab/SCENIC"<SCENIC@noreply.github.com>; 抄送: "qai"<1185958508@qq.com>;"Author"<author@noreply.github.com>; 主题: Re: [aertslab/SCENIC] runSCENIC_2_createRegulons (#134)

both scenic on r and pyscenic on python can work in linux. So i guess it's just the environment matters.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe.

ureyandy2009 commented 4 years ago

Did you get the ideal results by linux scenic ?  … ------------------ 原始邮件 ------------------ 发件人: "aertslab/SCENIC" <notifications@github.com>; 发送时间: 2020年7月11日(星期六) 上午10:09 收件人: "aertslab/SCENIC"<SCENIC@noreply.github.com>; 抄送: "qai"<1185958508@qq.com>;"Author"<author@noreply.github.com>; 主题: Re: [aertslab/SCENIC] runSCENIC_2_createRegulons (#134) both scenic on r and pyscenic on python can work in linux. So i guess it's just the environment matters. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe.

yes, it works by linux scenic