What are the numbers in brackets in the regulon names?

aertslab / SCENIC

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

http://scenic.aertslab.org

GNU General Public License v3.0

396 stars 94 forks source link

What are the numbers in brackets in the regulon names? #142

Closed CodeInTheSkies closed 3 years ago

CodeInTheSkies commented 4 years ago

Hi there,

What do the numbers within the regulon names in the AUC matrix represent?

Example, Gtf2b_extended (621g) ?

Would appreciate a reply asap.

Thank you very much!

yaolutian commented 3 years ago

I have the same question, and why I do not have the "_extended (XXg)" after running with pySCENIC?

Thanks!

s-aibar commented 3 years ago

The numbers in parenthesis in the regulon names indicate the number of genes in the regulon (i.e. "Dlx (35g)"). This is now clarified in the Vignette and the FAQ.