When running rungenie3 I got this message:
"Only 39% of the 1839 TFs in the database were found in the dataset. Do they use the same gene IDs?
"
I'm working with 10X data, I used GRCh38.92 as reference without any filtering on any genes.
Do you think the results can then be biased? Do you have any idea how I could increase the overlap between your database and my dataset?
Which annotation do you use or how could I have access to the list of TF?
Hi,
Thank you for your amazing work!
When running rungenie3 I got this message: "Only 39% of the 1839 TFs in the database were found in the dataset. Do they use the same gene IDs? "
I'm working with 10X data, I used GRCh38.92 as reference without any filtering on any genes.
Do you think the results can then be biased? Do you have any idea how I could increase the overlap between your database and my dataset? Which annotation do you use or how could I have access to the list of TF?
Thank you in advance,
Pernille