Thanks a lot for this wonderful tool. Can anyone please hint me why I am not able to generate the complete list of files after running the runGENIE3 function in the SCENIC workflow? In the Int folder, I am only able to have the files from 1.1_genesKept.Rds to 3.3_aucellRankings.Rds and only 3 files in the output folder. After that I cannot run any further analysis because the missing files from running runGENIE3. I want to be able to generate an output similar to the one in this link.
I have used the following code, which I adapted from this tutorial.
Thanks a lot for this wonderful tool. Can anyone please hint me why I am not able to generate the complete list of files after running the runGENIE3 function in the SCENIC workflow? In the Int folder, I am only able to have the files from 1.1_genesKept.Rds to 3.3_aucellRankings.Rds and only 3 files in the output folder. After that I cannot run any further analysis because the missing files from running runGENIE3. I want to be able to generate an output similar to the one in this link.
I have used the following code, which I adapted from this tutorial.
Thanks in advance from your kind help.