Error runSCENIC_2_createRegulons

aertslab / SCENIC

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

http://scenic.aertslab.org

GNU General Public License v3.0

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Error runSCENIC_2_createRegulons #192

Closed yutongo closed 3 years ago

yutongo commented 3 years ago

I get the error when I run: scenicOptions <- runSCENIC_2_createRegulons(scenicOptions)

11:16 Step 2. Identifying regulons [1] "there is no package called ‘arrow’" Error in runSCENIC_2_createRegulons(scenicOptions) : It is not possible to load the following databses: mm9-500bp-upstream-7species.mc9nr.feather

Does anyone meet with the same error? Thank you.

yutongo commented 3 years ago

The error is solved by updating RcisTarget: BiocManager::install("RcisTarget").