What is the function of "top10perTarget" or "top50perTarget" in runSCENIC_2_createRegulons?

aertslab / SCENIC

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

http://scenic.aertslab.org

GNU General Public License v3.0

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What is the function of "top10perTarget" or "top50perTarget" in runSCENIC_2_createRegulons? #201

Closed smilesw closed 2 years ago

smilesw commented 3 years ago

Hello everyone I have looked for the function of "top10perTarget" or "top50perTarget" in runSCENIC_2_createRegulons, but I cannot find the detailed explanation except for toy run in case of "top5perTarget".

What is the function and difference between the followings.

: runSCENIC_2_createRegulons(scenicOptions) : runSCENIC_2_createRegulons(scenicOptions, coexMethod=c("top10perTarget")) : runSCENIC_2_createRegulons(scenicOptions, coexMethod=c("top50perTarget"))

Thanks in advance.