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aertslab / SCENIC

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
http://scenic.aertslab.org
GNU General Public License v3.0
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Error in if (common.len == 1L) unlist(x, recursive = FALSE) else if (common.len > : #205

Open Zymaniswenzai opened 3 years ago

Zymaniswenzai commented 3 years ago

Dear all, Does anyone have the same problem as me? What's the solution? And when I ran the other cell cluster data, it was fine. but when I switched to a different set of data, this was a problem. SAD:(

> scenicOptions <- runSCENIC_2_createRegulons(scenicOptions,coexMethod=c("top5perTarget"))
10:51   Step 2. Identifying regulons
tfModulesSummary:
              [,1]
top5perTarget  360
10:51   RcisTarget: Calculating AUC
Scoring database:  [Source file: hg19-tss-centered-10kb-7species.mc9nr.feather]
Error in if (common.len == 1L) unlist(x, recursive = FALSE) else if (common.len >  : 
  argument is of length zero
In addition: Warning messages:
1: In RcisTarget::importRankings(dbFilePath, columns = randomCol) :
  The following columns are missing from the database: 
2: In RcisTarget::importRankings(dbFile, columns = rnktype) :
  The following columns are missing from the database: features
3: In importRankings(rnkName, columns = allGenes) :
  The following columns are missing from the database:

Thanks for any help!!