runSCENIC_2_createRegulons error

aertslab / SCENIC

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

http://scenic.aertslab.org

GNU General Public License v3.0

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runSCENIC_2_createRegulons error #209

Closed ivonyao closed 2 years ago

ivonyao commented 3 years ago

I have been stuck at this step, with an error as follows, not sure how to solve the problem. I have tried different computers and different downloads of the database.

Error in runSCENIC_2_createRegulons(scenicOptions) : It is not possible to load the following databses: mm9-500bp-upstream-7species.mc9nr.feather

ryrl970311 commented 3 years ago

I met the same error in load hg38refseq-r8010kb_up_and_down_tss.mc9nr.feather. Have you solved it ?

s-aibar commented 2 years ago

You probably need to set the path to the databases when initializing the run...