Due to the whole "Error in runSCENIC_2_createRegulons: object 'indexCol' not found" problem and problems with Conda supported versions of R for cluster, one of my colleagues ran my pipeline on an environment with an older version of SCENIC to circumvent the problem.
I get the same error when exploring the results from the analysis for each step, as I have problems reading read the scenicOptions file. An example below:
regulons <- loadInt(scenicOptions, "regulons")
Gives me the following error:
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'object' in selecting a method for function 'loadInt': object 'scenicOptions' not found
Due to the whole "Error in runSCENIC_2_createRegulons: object 'indexCol' not found" problem and problems with Conda supported versions of R for cluster, one of my colleagues ran my pipeline on an environment with an older version of SCENIC to circumvent the problem.
I get the same error when exploring the results from the analysis for each step, as I have problems reading read the scenicOptions file. An example below:
Gives me the following error:
Error in h(simpleError(msg, call)) : error in evaluating the argument 'object' in selecting a method for function 'loadInt': object 'scenicOptions' not found
Is this a common error? Something seems off.