Warning in .AUCell_calcAUC: Using only the first 14 genes (aucMaxRank) to calculate the AUC.

aertslab / SCENIC

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

http://scenic.aertslab.org

GNU General Public License v3.0

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Warning in .AUCell_calcAUC: Using only the first 14 genes (aucMaxRank) to calculate the AUC. #302

Closed zhang-TD closed 2 years ago

zhang-TD commented 2 years ago

Hi, When I am using the function "runSCENIC_3_scoreCells". I met a warning: "Warning in .AUCell_calcAUC(geneSets = geneSets, rankings = rankings, nCores = nCores, : Using only the first 14 genes (aucMaxRank) to calculate the AUC." Is this warning important? Will my results be unreliable because of this warning? Thank you very much!

s-aibar commented 2 years ago

Dear @zhang-TD ,

There is a bug in AUCell version 1.18.0. The bug has now been corrected, so please install the latest version of the package (either 1.18.1, which will take a few hours/days to become available from Bioconductor, or 1.19.1 from the Github repository).

Sorry for the inconvenience!