aertslab / SCENIC

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
http://scenic.aertslab.org
GNU General Public License v3.0
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build_loom error #321

Closed GreyRockIQ closed 1 year ago

GreyRockIQ commented 1 year ago

Hello I have an error while building loom file with Seurat rds file..as No default embedding set for the loom Error: [1] "Adding global attributes..." [1] "Adding matrix..." |======================================================================================================| 100%[1] "Adding column attributes..." [1] "Adding default metrics nUMI..." [1] "Adding default metrics nGene..." Warning: No default embedding set for the loom. You'll not be able to visualize it in SCope.[1] "Adding row attributes..." [1] "Adding columns graphs..." [1] "Adding row graphs..." [1] "Adding layers..."

Any suggestions to solve this? Thanks GreyRock