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aertslab / SCENIC

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
http://scenic.aertslab.org
GNU General Public License v3.0
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Error in AUCell step #324

Open wbf520qcp opened 1 year ago

wbf520qcp commented 1 year ago

Hello, I'm running SCENIC on over 50,000 cells and encountered errors at runSCENIC_2_createRegulons and runSCENIC_3_scoreCells

runSCENIC_2_createRegulons returned errors as below, but still generated intermediate files. pandoc: Could not find data file \"http://motifcollections.aertslab.org/v9/logos/cisbp__M0131.png\" [1] "pandoc document conversion failed with error 97"

Then when ran runSCENIC_3_scoreCells I got some error related to AUCell. I found something at https://github.com/aertslab/AUCell/issues/10. So I updated version of AUCell to 1.12.0, but still got the same error. Error in .AUCell_calcAUC(geneSets = geneSets, rankings = rankings, nCores = nCores, : Valid 'mctype': 'snow' or 'doMC'

Any thoughts are appreciated! Thanks

wbf520qcp commented 1 year ago

And the version of SCENIC is 1.2.0