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aertslab / SCENIC

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
http://scenic.aertslab.org
GNU General Public License v3.0
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Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' length #335

Open ishwarvh opened 1 year ago

ishwarvh commented 1 year ago

I have created a .loom file with gene-symbols as rownames and the cells as columns.

Unfortunately, I am unable to load the data properly because I get the error Error in .rowNamesDF<-(x, value = value) : invalid 'row.names' length , when I run the get_cell_annotation function.

I have carefully checked the length of the number of rows in my expression matrix and the number of rownames (gene_symbols) and they match up correctly.

Any idea what could be causing this problem? I appreciate your time and any suggestions that any of you may have.

Thank you

hrbmuzl commented 4 months ago

I am facing the same problem as you! Have you fixed it?