I trying use Scenic but with the below step I getting the erorr please anyone suggest is it version problem because my databses are okay and i have run some command mentiond in #222 ran without any errorr showed features
Motif databases selected:
mm10__refseq-r80__500bp_up_and_100bp_down_tss.mc9nr.genes_vs_motifs.rankings.feather
mm10__refseq-r80__10kb_up_and_down_tss.mc9nr.genes_vs_motifs.rankings.feather
[1] "The index column 'features' is not available in the file."
[1] "The index column 'features' is not available in the file."
Using the column '0610005C13Rik' as feature index for the ranking database.
Error in `dplyr::pull()`:
! Can't extract columns that don't exist.
✖ Column `features` doesn't exist.
Run `rlang::last_error()` to see where the error occurred.
Warning messages:
1: In initializeScenic(org = "mgi", dbDir = db_path, dbs = dbs, nCores = 10) :
It was not possible to load the following databses; check whether they are downloaded correctly:
mm10__refseq-r80__500bp_up_and_100bp_down_tss.mc9nr.genes_vs_motifs.rankings.feather
mm10__refseq-r80__10kb_up_and_down_tss.mc9nr.genes_vs_motifs.rankings.feather
2: In RcisTarget::importRankings(dbFile, columns = rnktype) :
The following columns are missing from the database: features
issue resolved with change the data base name #208
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I trying use Scenic but with the below step I getting the erorr please anyone suggest is it version problem because my databses are okay and i have run some command mentiond in #222 ran without any errorr showed features
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issue resolved with change the data base name #208