search

aertslab / SCENIC

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
http://scenic.aertslab.org
GNU General Public License v3.0
421 stars 95 forks source link

How to apply SCENIC to zebrafish except for human,mouse and fly at the initializeScenic step? #371

Open rlawltn9718 opened 1 year ago

rlawltn9718 commented 1 year ago

I've generated cistarget database for zebrafish. but I'm stopped at the initializeScenic step.

May I ask how to bypass the requirement in initializeScenic()that'org' should be one of: mgi, hgnc, dmel?

ChenJH-scau commented 1 year ago

Hello, I also encountered the same problem. How to set the initializeScenic step for non modal species