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aertslab / SCENIC

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
http://scenic.aertslab.org
GNU General Public License v3.0
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exportsForArboreto input matrix log transformed or not #418

Open iichelhadi opened 8 months ago

iichelhadi commented 8 months ago

As in the title, i am using exportsForArboreto to export data to run grnboost but it is not clear to me if I need to use the raw expression matrix or the log transformed one since GENIE3 uses the log transformed matrix according to the tutorial.

Regards