addresses issue 168 by parameterizing checkAnnots rnktype

aertslab / SCENIC

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

http://scenic.aertslab.org

GNU General Public License v3.0

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addresses issue 168 by parameterizing checkAnnots rnktype #432

Open blaserlab opened 6 months ago

blaserlab commented 6 months ago

I encountered errors with initializeScenic() and runSCENIC_2_createRegulons() using the mm10 databases. These changes pass the dbIndexCol parameter through to the internal checkAnnots function. This was tested successfully using your R tutorial and the mm10 .feather files provided.