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aertslab / SCENIC

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
http://scenic.aertslab.org
GNU General Public License v3.0
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Bioconductor version #459

Closed flde closed 4 months ago

flde commented 5 months ago

Hey Scenic-Team,

Many thanks for the package. To install the latest scenic version in R you require bioconductor version 4.0 according to the SCENIC_Setup.html. However, that version of bioconductor does not exist, right? Highest is 3.19.

Best, Florian

ghuls commented 4 months ago

Try to use pySCENIC instead of SCENIC (deprecated).

Container versions are available: https://pyscenic.readthedocs.io/en/latest/installation.html#docker-podman-and-singularity-apptainer-images

flde commented 4 months ago

Many thanks for the great package, the pySCENIC version works very nicely.