<--
Please explain what the bug is, and if possible, the steps to reproduce it.
scenicOptions <- initializeScenic(org="hgnc", dbDir="cisTarget_databases", nCores=1)
Motif databases selected:
hg19-500bp-upstream-7species.mc9nr.feather
hg19-tss-centered-10kb-7species.mc9nr.feather
[1] "The index column 'features' is not available in the file."
[1] "The index column 'features' is not available in the file."
Error in eval(as.name(motifAnnotName)) :
object 'motifAnnotations_hgnc' not found
In addition: Warning message:
In initializeScenic(org = "hgnc", dbDir = "cisTarget_databases", :
It was not possible to load the following databses; check whether they are downloaded correctly:
hg19-500bp-upstream-7species.mc9nr.feather
hg19-tss-centered-10kb-7species.mc9nr.feather
Providing a minimal example or a mini-dataset to reproduce the error will help a lot!
-->
hi
Why did the function suddenly stop working?
<-- Please explain what the bug is, and if possible, the steps to reproduce it. scenicOptions <- initializeScenic(org="hgnc", dbDir="cisTarget_databases", nCores=1) Motif databases selected: hg19-500bp-upstream-7species.mc9nr.feather hg19-tss-centered-10kb-7species.mc9nr.feather [1] "The index column 'features' is not available in the file." [1] "The index column 'features' is not available in the file." Error in eval(as.name(motifAnnotName)) : object 'motifAnnotations_hgnc' not found In addition: Warning message: In initializeScenic(org = "hgnc", dbDir = "cisTarget_databases", : It was not possible to load the following databses; check whether they are downloaded correctly: hg19-500bp-upstream-7species.mc9nr.feather hg19-tss-centered-10kb-7species.mc9nr.feather Providing a minimal example or a mini-dataset to reproduce the error will help a lot! -->