Errors in running runSCENIC_3_scoreCells(): unable to start device PNG

aertslab / SCENIC

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

http://scenic.aertslab.org

GNU General Public License v3.0

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Closed chent5 closed 5 years ago

chent5 commented 5 years ago

Hi,

Thanks a lot for developing this package.

I ran the R script in the Center for Research Computing. I got the error message when running runSCENIC_3_scoreCells() function:

It seems it failed to generate .png files in the Step3_RegulonActivity_tSNE_colByActivity folder.

Could you help to solve this problem? Thank you so much!

chent5 commented 5 years ago

I have solved this problem.

liuyifang commented 5 years ago

I also meet this problem and solved by adding options(bitmapType = 'cairo') to R script.

iichelhadi commented 1 year ago

I have solved this problem.

how did you solve the problem?