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aertslab / SCope

Fast visualization tool for large-scale and high dimensional single-cell data
GNU General Public License v3.0
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extend getCellColorByFeatures (2) #27

Closed kreftl closed 6 years ago

kreftl commented 6 years ago

extend getCellColorByFeatures by new arguments:

coordinatesID ageingAnnotationID add possibility to put clusters next to genes and regulons

KrisDavie commented 6 years ago

Partially resolved in https://github.com/aertslab/SCope/commit/efb22a6262f057f612538c31ee7868024433cda1

Still need to implement colouring and searching for clusters

KrisDavie commented 6 years ago

Resolved in https://github.com/aertslab/SCope/commit/1cb10f4900b34a1ae0defd91645eeb6fb3988b3c and https://github.com/aertslab/SCope/commit/f97614ac1294e9702fe2fc36789eb8e93e99cd99 Filtering by cluster requires the following format:

{
    "name": "Clustering_X", # Where X equals a clusteringID.
    "values": ["1", "3", ...] # Where vaules are the cluster IDs.
}

Followup: https://github.com/aertslab/SCope/issues/43