search

aertslab / arboreto

A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
BSD 3-Clause "New" or "Revised" License
52 stars 24 forks source link

Inference without TF #37

Open binonteji opened 1 year ago

binonteji commented 1 year ago

Thanks for the great work!

Can I infer a network from the GRNBoost2 or GENIE3 from the expression_matrix but without tf_names ?

gennadyFauna commented 6 months ago

I believe the standard way to do this is to pass in tf_names='all' or None.