Hello, thank you for developing such powerful tool. I met a question that hard to solve, the command is as following:
fasta_filename="test.fa"
motifs_dir="motifs_cb_format"
motifs_list_filename="motifs.lst"
db_prefix="st"
nbr_threads=20
cd /public/home/chaohe/create_cisTarget_databases
when running this, I would get one error:
Scoring 530 motifs with Cluster-Buster took: 3.247628 seconds
Writing cisTarget regions vs motifs scores db: "st.motifs_vs_regions.scores.feather"
Traceback (most recent call last):
File "/public/home/chaohe/create_cisTarget_databases/create_cistarget_motif_databases.py", line 539, in
main()
File "/public/home/chaohe/create_cisTarget_databases/create_cistarget_motif_databases.py", line 490, in main
write_db(ct_db=ct_scores_db_motifs_vs_regions_or_genes, db_prefix=db_prefix)
File "/public/home/chaohe/create_cisTarget_databases/create_cistarget_motif_databases.py", line 480, in write_db
version=2,
File "/public/home/chaohe/create_cisTarget_databases/cistarget_db.py", line 1208, in write_db
version=version,
TypeError: write_feather() got an unexpected keyword argument 'compression'
Hello, thank you for developing such powerful tool. I met a question that hard to solve, the command is as following: fasta_filename="test.fa" motifs_dir="motifs_cb_format" motifs_list_filename="motifs.lst" db_prefix="st" nbr_threads=20 cd /public/home/chaohe/create_cisTarget_databases
Score all motifs at once and create rankings
create_cistarget_motif_databases.py \ -f "${fasta_filename}" \ -M "${motifs_dir}" \ -m "${motifs_list_filename}" \ -o "${db_prefix}" \ -t "${nbr_threads}"
when running this, I would get one error: Scoring 530 motifs with Cluster-Buster took: 3.247628 seconds
Writing cisTarget regions vs motifs scores db: "st.motifs_vs_regions.scores.feather" Traceback (most recent call last): File "/public/home/chaohe/create_cisTarget_databases/create_cistarget_motif_databases.py", line 539, in
main()
File "/public/home/chaohe/create_cisTarget_databases/create_cistarget_motif_databases.py", line 490, in main
write_db(ct_db=ct_scores_db_motifs_vs_regions_or_genes, db_prefix=db_prefix)
File "/public/home/chaohe/create_cisTarget_databases/create_cistarget_motif_databases.py", line 480, in write_db
version=2,
File "/public/home/chaohe/create_cisTarget_databases/cistarget_db.py", line 1208, in write_db
version=version,
TypeError: write_feather() got an unexpected keyword argument 'compression'
Could you please help me? Thank you very much!