convert SCENIC+ public motif collection to HOMER format

aertslab / create_cisTarget_databases

Create cisTarget databases

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convert SCENIC+ public motif collection to HOMER format #42

Open pchiang5 opened 10 months ago

pchiang5 commented 10 months ago

Hello,

Can the database be converted to HOMER format with Log odds detection threshold? Thank you.

ghuls commented 10 months ago

Conversion to HOMER format with Log odds detection threshold is difficult. As far as I know, it would only be possible if you have access to the original sequences (positive and negative) used to make the original PWMs.