aertslab / create_cisTarget_databases

Create cisTarget databases
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create_motif_cisTarget worked but no feature file #48

Closed XiaoKaixuan12333 closed 2 months ago

XiaoKaixuan12333 commented 2 months ago

Hi, I success run the "create_cistarget_motif_databases.py",the output is

Scoring 10249 motifs with Cluster-Buster took: 6763.836560 seconds

Writing cisTarget regions vs motifs scores db: "/mnt/disk1/kxxiao/archr//scenic_analysis/cistarget_database_my/.motifs_vs_regions.scores.feather" Writing cisTarget regions vs motifs scores db took: 11.126533 seconds

Writing cisTarget motifs vs regions scores db: "/mnt/disk1/kxxiao/archr//scenic_analysis/cistarget_database_my/.regions_vs_motifs.scores.feather" Writing cisTarget motifs vs regions scores db took: 29.617211 seconds

Creating cisTarget rankings db from cisTarget scores db took: 93.298678 seconds

Writing cisTarget motifs vs regions rankings db: "/mnt/disk1/kxxiao/archr//scenic_analysis/cistarget_database_my/.regions_vs_motifs.rankings.feather" Writing cisTarget motifs vs regions rankings db took: 17.883978 seconds

but I had checked the path/mnt/disk1/kxxiao/archr//scenic_analysis/cistarget_database_my/,this is no these three files. I don't know what is wrong. Does anyone can help me ? please! @ghuls @tropfenameimer