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aertslab / pySCENIC

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
http://scenic.aertslab.org
GNU General Public License v3.0
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NES and p-value #399

Open wangjiawen2013 opened 2 years ago

wangjiawen2013 commented 2 years ago

Hi, Is there an easy way to add NES and p-value/q-value and other filters to the auc_mtx or keep as separated files ? If so, we can filter the regulons flexibly.

SeppeDeWinter commented 2 years ago

Please see following issues where your question is already adressed:

https://github.com/aertslab/pySCENIC/issues/376 https://github.com/aertslab/pySCENIC/issues/356 https://github.com/aertslab/pySCENIC/issues/320